Movement: a Python toolbox for analysing motion tracking data
K.4.601 | Day 1 | 17:40 - 17:55 | Speakers: Niko Sirmpilatze
Abstract
The study of animal behaviour has been transformed by the increasing use of machine learning-based tools, such as DeepLabCut and SLEAP, which can track the positions of animals and their body parts from video footage. However, there is currently no user-friendly, general-purpose solution for processing and analysing the motion tracks generated by these tools. To address this gap, we are developing movement, an open-source Python package that provides a unified interface for analysing motion tracking data from multiple formats. Initially, movement prioritised implementing methods for data cleaning and kinematic analysis. We are now focusing on expanding its data visualization capabilities and on developing metrics to analyze how animals interact with each other and with their environment. Future plans include adding modules for specialised applications such as pupillometry and collective behaviour, as well as supporting integration with neurophysiological data analysis tools. Importantly, movement is designed to cater to researchers with varying levels of coding expertise and computational resources, featuring an intuitive graphical user interface. Furthermore, the project is committed to transparency, with dedicated engineers collaborating with a global community of contributors to ensure its long-term sustainability. We invite feedback from the community to help shape movement's future as a comprehensive toolbox for analysing animal behaviour. For more information, please visit movement.neuroinformatics.dev.
Speakers
Thanks for stopping by my little corner of the internet!
I’m a London-based neuroscientist and research software engineer passionate about open, collaborative, and reproducible science.
I build open-source tools to study brains and the behaviours they produce, and I lead movement — a Python package for analysing animal motion. With a background in medicine and a PhD in neuroimaging, I’ve kept a long-standing interest in computational neuroanatomy, contributing to BrainGlobe and helping create new brain atlases for emerging model organisms.
As a Fellow of the Software Sustainability Institute, I work to spread the adoption of open-source tools for animal behaviour, especially through training workshops for early-career researchers.
Links
External Links
Notice: The placeholder video image is licensed under CC BY-SA 4.0. The original image can be found hereChanges made to the image are: Cropped the image to a new ratio, part of the image was cut off.
